Software Copyright Notice
Software: DRAGEN v4.2
© Illumina, Inc. 2023
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*************************************************************************************
The following components are covered under the Apache 2.0 license:
aws-fpga-v1.4.14 © 2016 Amazon.com Inc.
aws-sdk-cpp-1.3.24 © 2016 Amazon.com Inc.
aws-sdk-cpp-1.7.84 © 2016 Amazon.com Inc.
azure-storage-cpp-v6.1.0
azure-storage-cpp-v7.5.0
CTPL-v.0.0.2 Copyright (C) 2014 by Vitaliy Vitsentiy
libcount
openssl-OpenSSL_1_0_2u
parallel-hashmap-1.32
spVCF-v1.1.0
xgboost-1.7.4
XRT-202020.2.8.832
The following components are covered under the BSD-3 license:
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cqf-v0.1 Copyright (c) 2017, Rob Johnson and Prahsant Pandey
sparsepp-5f5fff051b2fa9b09f18da546be48347a3d4daed Copyright (c) 2016, Gregory Popovitch -
greg7mdp@gmail.com
src-73.0.3677.0 © 2015 The Chromium Authors
staden-io_lib-1.14.8 Copyright (c) Medical Research Council 1994. All rights reserved; Copyright (c),
Genome Research Ltd (GRL).
The following components are covered under the Boost license:
boost-boost_1_58_0 © 2007 Beman Dawes, David Abrahams, Rene Rivera
range-v3-0.11.0
The following components are covered under the Curl license:
curl-curl-7_54_0
The following components are covered under the MIT license:
bamtools-v2.4.1 Copyright (c) Derek Barnett, Erik Garrison, Gabor Marth, Michael Stromberg
cpprestsdk-2.10.17 Copyright (c) Microsoft Corporation
cpprestsdk-v2.10.14 Copyright (c) Microsoft Corporation
cppzmq-v4.6.0
cpr-1.3.0 Copyright (c) 2017 Huu Nguyen
dotnet-runtime-2.1.0-linux-x64.tar.gz 2015 .NET Foundation
dotnet-runtime-2.1.0-rhel.6-x64.tar.gz 2015 .NET Foundation
glimpse-1.1.1 Copyright (C) 2022-2023 Simone Rubinacci, Copyright (C) 2022-2023 Olivier Delaneau
hopscotch-map-v2.2.1 Copyright (c) 2016 Thibaut Goetghebuer-Planchon <tessil@gmx.com>
htslib-1.10.2 Copyright (C) 2012-2022 Genome Research Ltd.
jsoncpp-1.8.0 Copyright (c) 2007-2010 Baptiste Lepilleur and The JsonCpp Authors
kent-v363_base© 2018 - Kent Informatics, Inc. All rights reserved.
libunwind-v1.6.2 Copyright (c) 2002 Hewlett-Packard Co.
libxml2-2.9.9 Copyright (C) 1998-2012 Daniel Veillard. All Rights Reserved.
rapidjson-d87b698d0fcc10a5f632ecbc80a9cb2a8fa094a5 Copyright (C) 2015 THL A29 Limited, a
Tencent company, and Milo Yip.
samtools-samtools-0.1.19 Copyright (C) 2008-2020 Genome Research Ltd.
spdlog-v1.8.5 Copyright (c) 2016 Gabi Melman.
The following components are covered under the Mozilla Public License 2.0:
eigen-3.3.3
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Mozilla Public License, Version 2.0
1. Definitions
1.1. “Contributor” means each individual or legal entity that creates, contributes to the creation of, or
owns Covered Software.
1.2. “Contributor Version” means the combination of the Contributions of others (if any) used by a
Contributor and that particular Contributor’s Contribution.
1.3. “Contribution” means Covered Software of a particular Contributor.
1.4. “Covered Software” means Source Code Form to which the initial Contributor has attached the
notice in Exhibit A, the Executable Form of such Source Code Form, and Modifications of such Source
Code Form, in each case including portions thereof.
1.5. “Incompatible With Secondary Licenses” Means that the initial Contributor has attached the notice
described in Exhibit B to the Covered Software; or that the Covered Software was made available under
the terms of version 1.1 or earlier of the License, but not also under the terms of a Secondary License.
1.6. “Executable Form” means any form of the work other than Source Code Form.
1.7. “Larger Work” means a work that combines Covered Software with other material, in a separate file
or files, that is not Covered Software.
1.8. “License” means this document.
1.9. “Licensable” means having the right to grant, to the maximum extent possible, whether at the time
of the initial grant or subsequently, any and all of the rights conveyed by this License.
1.10. “Modifications” means any of the following: any file in Source Code Form that results from an
addition to, deletion from, or modification of the contents of Covered Software; or any new file in
Source Code Form that contains any Covered Software.
1.11. “Patent Claims” of a Contributor means any patent claim(s), including without limitation, method,
process, and apparatus claims, in any patent Licensable by such Contributor that would be infringed, but
for the grant of the License, by the making, using, selling, offering for sale, having made, import, or
transfer of either its Contributions or its Contributor Version.
1.12. “Secondary License” means either the GNU General Public License, Version 2.0, the GNU Lesser
General Public License, Version 2.1, the GNU Affero General Public License, Version 3.0, or any later
versions of those licenses.
1.13. “Source Code Form” means the form of the work preferred for making modifications.
1.14. “You” (or “Your”) means an individual or a legal entity exercising rights under this License. For legal
entities, “You” includes any entity that controls, is controlled by, or is under common control with You.
For purposes of this definition, “control” means (a) the power, direct or indirect, to cause the direction
or management of such entity, whether by contract or otherwise, or (b) ownership of more than fifty
percent (50%) of the outstanding shares or beneficial ownership of such entity.
2. License Grants and Conditions
2.1. Grants
Each Contributor hereby grants You a world-wide, royalty-free, non-exclusive license: under intellectual
property rights (other than patent or trademark) Licensable by such Contributor to use, reproduce,
make available, modify, display, perform, distribute, and otherwise exploit its Contributions, either on
an unmodified basis, with Modifications, or as part of a Larger Work; and under Patent Claims of such
Contributor to make, use, sell, offer for sale, have made, import, and otherwise transfer either its
Contributions or its Contributor Version.
2.2. Effective Date
The licenses granted in Section 2.1 with respect to any Contribution become effective for each
Contribution on the date the Contributor first distributes such Contribution.
2.3. Limitations on Grant Scope
The licenses granted in this Section 2 are the only rights granted under this License. No additional rights
or licenses will be implied from the distribution or licensing of Covered Software under this License.
Notwithstanding Section 2.1(b) above, no patent license is granted by a Contributor: for any code that a
Contributor has removed from Covered Software; or for infringements caused by: (i) Your and any other
third party’s modifications of Covered Software, or (ii) the combination of its Contributions with other
software (except as part of its Contributor Version); or under Patent Claims infringed by Covered
Software in the absence of its Contributions.
This License does not grant any rights in the trademarks, service marks, or logos of any Contributor
(except as may be necessary to comply with the notice requirements in Section 3.4).
2.4. Subsequent Licenses
No Contributor makes additional grants as a result of Your choice to distribute the Covered Software
under a subsequent version of this License (see Section 10.2) or under the terms of a Secondary License
(if permitted under the terms of Section 3.3).
2.5. Representation
Each Contributor represents that the Contributor believes its Contributions are its original creation(s) or
it has sufficient rights to grant the rights to its Contributions conveyed by this License.
2.6. Fair Use
This License is not intended to limit any rights You have under applicable copyright doctrines of fair use,
fair dealing, or other equivalents.
2.7. Conditions
Sections 3.1, 3.2, 3.3, and 3.4 are conditions of the licenses granted in Section 2.1.
3. Responsibilities
3.1. Distribution of Source Form
All distribution of Covered Software in Source Code Form, including any Modifications that You create or
to which You contribute, must be under the terms of this License. You must inform recipients that the
Source Code Form of the Covered Software is governed by the terms of this License, and how they can
obtain a copy of this License. You may not attempt to alter or restrict the recipients’ rights in the Source
Code Form.
3.2. Distribution of Executable Form
If You distribute Covered Software in Executable Form then: such Covered Software must also be made
available in Source Code Form, as described in Section 3.1, and You must inform recipients of the
Executable Form how they can obtain a copy of such Source Code Form by reasonable means in a timely
manner, at a charge no more than the cost of distribution to the recipient; and You may distribute such
Executable Form under the terms of this License, or sublicense it under different terms, provided that
the license for the Executable Form does not attempt to limit or alter the recipients’ rights in the Source
Code Form under this License.
3.3. Distribution of a Larger Work
You may create and distribute a Larger Work under terms of Your choice, provided that You also comply
with the requirements of this License for the Covered Software. If the Larger Work is a combination of
Covered Software with a work governed by one or more Secondary Licenses, and the Covered Software
is not Incompatible With Secondary Licenses, this License permits You to additionally distribute such
Covered Software under the terms of such Secondary License(s), so that the recipient of the Larger Work
may, at their option, further distribute the Covered Software under the terms of either this License or
such Secondary License(s).
3.4. Notices
You may not remove or alter the substance of any license notices (including copyright notices, patent
notices, disclaimers of warranty, or limitations of liability) contained within the Source Code Form of the
Covered Software, except that You may alter any license notices to the extent required to remedy
known factual inaccuracies.
3.5. Application of Additional Terms
You may choose to offer, and to charge a fee for, warranty, support, indemnity or liability obligations to
one or more recipients of Covered Software. However, You may do so only on Your own behalf, and not
on behalf of any Contributor. You must make it absolutely clear that any such warranty, support,
indemnity, or liability obligation is offered by You alone, and You hereby agree to indemnify every
Contributor for any liability incurred by such Contributor as a result of warranty, support, indemnity or
liability terms You offer. You may include additional disclaimers of warranty and limitations of liability
specific to any jurisdiction.
4. Inability to Comply Due to Statute or Regulation
If it is impossible for You to comply with any of the terms of this License with respect to some or all of
the Covered Software due to statute, judicial order, or regulation then You must: (a) comply with the
terms of this License to the maximum extent possible; and (b) describe the limitations and the code they
affect. Such description must be placed in a text file included with all distributions of the Covered
Software under this License. Except to the extent prohibited by statute or regulation, such description
must be sufficiently detailed for a recipient of ordinary skill to be able to understand it.
5. Termination
5.1. The rights granted under this License will terminate automatically if You fail to comply with any of
its terms. However, if You become compliant, then the rights granted under this License from a
particular Contributor are reinstated (a) provisionally, unless and until such Contributor explicitly and
finally terminates Your grants, and (b) on an ongoing basis, if such Contributor fails to notify You of the
non-compliance by some reasonable means prior to 60 days after You have come back into compliance.
Moreover, Your grants from a particular Contributor are reinstated on an ongoing basis if such
Contributor notifies You of the non-compliance by some reasonable means, this is the first time You
have received notice of non-compliance with this License from such Contributor, and You become
compliant prior to 30 days after Your receipt of the notice.
5.2. If You initiate litigation against any entity by asserting a patent infringement claim (excluding
declaratory judgment actions, counter-claims, and cross-claims) alleging that a Contributor Version
directly or indirectly infringes any patent, then the rights granted to You by any and all Contributors for
the Covered Software under Section 2.1 of this License shall terminate.
5.3. In the event of termination under Sections 5.1 or 5.2 above, all end user license agreements
(excluding distributors and resellers) which have been validly granted by You or Your distributors under
this License prior to termination shall survive termination.
6. Disclaimer of Warranty
Covered Software is provided under this License on an “as is” basis, without warranty of any kind, either
expressed, implied, or statutory, including, without limitation, warranties that the Covered Software is
free of defects, merchantable, fit for a particular purpose or non-infringing. The entire risk as to the
quality and performance of the Covered Software is with You. Should any Covered Software prove
defective in any respect, You (not any Contributor) assume the cost of any necessary servicing, repair, or
correction. This disclaimer of warranty constitutes an essential part of this License. No use of any
Covered Software is authorized under this License except under this disclaimer.
7. Limitation of Liability
Under no circumstances and under no legal theory, whether tort (including negligence), contract, or
otherwise, shall any Contributor, or anyone who distributes Covered Software as permitted above, be
liable to You for any direct, indirect, special, incidental, or consequential damages of any character
including, without limitation, damages for lost profits, loss of goodwill, work stoppage, computer failure
or malfunction, or any and all other commercial damages or losses, even if such party shall have been
informed of the possibility of such damages. This limitation of liability shall not apply to liability for
death or personal injury resulting from such party’s negligence to the extent applicable law prohibits
such limitation. Some jurisdictions do not allow the exclusion or limitation of incidental or consequential
damages, so this exclusion and limitation may not apply to You.
8. Litigation
Any litigation relating to this License may be brought only in the courts of a jurisdiction where the
defendant maintains its principal place of business and such litigation shall be governed by laws of that
jurisdiction, without reference to its conflict-of-law provisions. Nothing in this Section shall prevent a
party’s ability to bring cross-claims or counter-claims.
9. Miscellaneous
This License represents the complete agreement concerning the subject matter hereof. If any provision
of this License is held to be unenforceable, such provision shall be reformed only to the extent necessary
to make it enforceable. Any law or regulation which provides that the language of a contract shall be
construed against the drafter shall not be used to construe this License against a Contributor.
10. Versions of the License
10.1. New Versions
Mozilla Foundation is the license steward. Except as provided in Section 10.3, no one other than the
license steward has the right to modify or publish new versions of this License. Each version will be given
a distinguishing version number.
10.2. Effect of New Versions
You may distribute the Covered Software under the terms of the version of the License under which You
originally received the Covered Software, or under the terms of any subsequent version published by
the license steward.
10.3. Modified Versions
If you create software not governed by this License, and you want to create a new license for such
software, you may create and use a modified version of this License if you rename the license and
remove any references to the name of the license steward (except to note that such modified license
differs from this License).
10.4. Distributing Source Code Form that is Incompatible With Secondary Licenses
If You choose to distribute Source Code Form that is Incompatible With Secondary Licenses under the
terms of this version of the License, the notice described in Exhibit B of this License must be attached.
Exhibit A - Source Code Form License Notice
This Source Code Form is subject to the terms of the Mozilla Public License, v. 2.0. If a copy of the MPL
was not distributed with this file, You can obtain one at https://mozilla.org/MPL/2.0/.
If it is not possible or desirable to put the notice in a particular file, then You may include the notice in a
location (such as a LICENSE file in a relevant directory) where a recipient would be likely to look for such
a notice.
Protocol Buffer License
Copyright 2008 Google Inc. All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:
 * Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
 * Redistributions in binary form must reproduce the above
copyright notice, this list of conditions and the following disclaimer
in the documentation and/or other materials provided with the
distribution.
 * Neither the name of Google Inc. nor the names of its
contributors may be used to endorse or promote products derived from
this software without specific prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
Code generated by the Protocol Buffer compiler is owned by the owner
of the input file used when generating it. This code is not
standalone and requires a support library to be linked with it. This
support library is itself covered by the above license.
For the programs or components that are licensed under an open source license that gives you the right
to receive the source code for that binary, you can obtain a copy of the applicable source code on
physical media by submitting a written request to:
Illumina, Inc.
Attn: Legal Department
5200 Illumina Way
San Diego, CA 92122
We may charge you a fee to cover the cost of physical media and processing. Your request must be sent
(i) within three (3) years of the date you received the Illumina product that included the component or
binary file(s) that are the subject of your request.